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  5. Brara.G00015.1

Brara.G00015.1


Description : beta-class expansin


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00015.1
Cluster HCAA Clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
At4g28250 No alias EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9] 0.03 Orthogroups_2024-Update
Bradi3g33106 No alias expansin B2 0.03 Orthogroups_2024-Update
Bradi3g33130 No alias expansin B2 0.03 Orthogroups_2024-Update
Brara.K00035.1 No alias beta-class expansin 0.03 Orthogroups_2024-Update
HORVU1Hr1G054250.9 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G088140.2 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_166764g0010 No alias (q7x6j9|exb17_orysa : 194.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
PSME_00008080-RA No alias (q7x6j9|exb17_orysa : 305.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00039752-RA No alias (q7x6j9|exb17_orysa : 251.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Pp1s313_58V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Pp1s313_59V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update
Sobic.001G301600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc07g054170 No alias expansin B3 (AHRD V3.3 *** AT4G28250.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004371 glycerone kinase activity IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 72 151
IPR007117 Expansin_CBD 165 246
No external refs found!