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  5. Brara.G00119.1

Brara.G00119.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000883 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00119.1
Cluster HCAA Clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
Solyc05g005790 No alias Ring finger protein, putative (AHRD V3.3 *** B9S4M2_RICCO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0015850 organic hydroxy compound transport IEP Predicted GO
BP GO:0015918 sterol transport IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
BP GO:0032365 intracellular lipid transport IEP Predicted GO
BP GO:0032366 intracellular sterol transport IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 158
No external refs found!