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  5. Brara.G00123.1

Brara.G00123.1


Description : regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00123.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
At4g09100 No alias RING-H2 finger protein ATL39... 0.02 Orthogroups_2024-Update
GRMZM2G021796 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G447566 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G014600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G079170.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G009820.3 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Mp8g15250.1 No alias RING-H2-class E3 ligase 0.02 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G100200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G030200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g032660 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen02g012490 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_2025.32 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00020684.6 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 104 147
No external refs found!