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  5. Brara.G00196.1

Brara.G00196.1


Description : TUB-type transcription factor


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00196.1
Cluster HCAA Clusters: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
83983 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Bradi4g24740 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
GRMZM2G068586 No alias tubby like protein 7 0.03 Orthogroups_2024-Update
GRMZM2G163726 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Glyma.20G166900 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
HORVU1Hr1G076900.2 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os03g22800 No alias OsFBT5 - F-box and tubby domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g43850 No alias OsFBT9 - F-box and tubby domain containing protein, expressed 0.03 Orthogroups_2024-Update
Seita.5G325200.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.7G293600.1 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.008G047400.2 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G152200.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Sopen04g027400 No alias Tub family 0.04 Orthogroups_2024-Update
evm.model.tig00001049.14 No alias (at1g47270 : 107.0) Member of TLP family; tubby like... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000007 Tubby_C 109 372
IPR001810 F-box_dom 48 87
No external refs found!