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  5. Brara.G00313.1

Brara.G00313.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0001411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00313.1
Cluster HCAA Clusters: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G125034 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G160370 No alias plant U-box 17 0.02 Orthogroups_2024-Update
Glyma.02G264200 No alias plant U-box 13 0.03 Orthogroups_2024-Update
HORVU1Hr1G069990.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.009G173300.2 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR000225 Armadillo 399 436
IPR003613 Ubox_domain 271 342
No external refs found!