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  5. Brara.G00386.1

Brara.G00386.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00386.1
Cluster HCAA Clusters: Cluster_402

Target Alias Description ECC score Gene Family Method Actions
230688 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.03 Orthogroups_2024-Update
At1g10680 No alias ABC transporter B family member 10... 0.04 Orthogroups_2024-Update
At3g28390 No alias ABC transporter B family member 18... 0.06 Orthogroups_2024-Update
Brara.B03326.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.I01939.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Glyma.17G041300 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.19G016600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G065320.10 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g38570 No alias multidrug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g05710 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.03 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.03 Orthogroups_2024-Update
MA_83806g0010 No alias (q6yuu5|mdr_orysa : 1360.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00006521-RA No alias (at3g28345 : 1427.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
PSME_00011041-RA No alias (at4g25960 : 1546.0) P-glycoprotein 2 (PGP2); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00020852-RA No alias (at3g28345 : 1431.0) ABC transporter family protein;... 0.01 Orthogroups_2024-Update
PSME_00027754-RA No alias (at2g47000 : 1521.0) Multidrug resistance ... 0.02 Orthogroups_2024-Update
PSME_00031965-RA No alias (q6yuu5|mdr_orysa : 1268.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00039058-RA No alias (q6yuu5|mdr_orysa : 1225.0) Putative multidrug... 0.03 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.03 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.03 Orthogroups_2024-Update
Pp1s28_282V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Seita.5G031800.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.5G283500.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.5G283700.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.006G123100.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Solyc02g071340 No alias ABC transporter B family protein (AHRD V3.3 *** G7ILW7_MEDTR) 0.02 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 627 899
IPR011527 ABC1_TM_dom 58 276
IPR003439 ABC_transporter-like 343 491
IPR003439 ABC_transporter-like 966 1113
No external refs found!