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  5. Brara.G00424.1

Brara.G00424.1


Description : component *(uL18) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00424.1
Cluster HCAA Clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
144921 No alias ribosomal protein L5 0.07 Orthogroups_2024-Update
A4A49_19400 No alias 60s ribosomal protein l5 0.16 Orthogroups_2024-Update
At3g25520 No alias RPL5A [Source:UniProtKB/TrEMBL;Acc:A0A178V891] 0.05 Orthogroups_2024-Update
At5g39740 No alias RPL5B [Source:UniProtKB/TrEMBL;Acc:A0A178UJU5] 0.04 Orthogroups_2024-Update
Bradi1g13630 No alias ribosomal protein L5 B 0.13 Orthogroups_2024-Update
Bradi4g13640 No alias ribosomal protein L5 0.17 Orthogroups_2024-Update
Bradi5g09500 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Cre14.g621450 No alias ribosomal protein L5 B 0.15 Orthogroups_2024-Update
GRMZM5G815894 No alias ribosomal protein L5 0.04 Orthogroups_2024-Update
Glyma.07G059900 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
Glyma.07G060000 No alias ribosomal protein L5 B 0.11 Orthogroups_2024-Update
Glyma.13G280200 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
Glyma.13G280300 No alias ribosomal protein L5 B 0.09 Orthogroups_2024-Update
Glyma.16G028800 No alias ribosomal protein L5 B 0.12 Orthogroups_2024-Update
HORVU2Hr1G073320.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
HORVU5Hr1G092630.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
LOC_Os01g67134 No alias ribosomal L18p/L5e family protein, putative, expressed 0.06 Orthogroups_2024-Update
MA_70965g0010 No alias (q6unt2|rl5_cucsa : 417.0) 60S ribosomal protein L5 -... 0.08 Orthogroups_2024-Update
Mp4g15800.1 No alias component RPL5 of LSU proteome component 0.07 Orthogroups_2024-Update
Potri.013G128600 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Potri.014G174000 No alias ribosomal protein L5 B 0.14 Orthogroups_2024-Update
Potri.019G099000 No alias ribosomal protein L5 B 0.11 Orthogroups_2024-Update
Pp1s364_3V6 No alias ribosomal protein 0.11 Orthogroups_2024-Update
Pp1s38_329V6 No alias ribosomal protein 0.14 Orthogroups_2024-Update
Pp1s97_115V6 No alias ribosomal protein 0.2 Orthogroups_2024-Update
Seita.5G413500.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Sobic.003G387900.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Solyc06g007670 No alias 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA) 0.3 Orthogroups_2024-Update
Solyc06g082870 No alias 60S ribosomal protein L5-like protein (AHRD V3.3 ***... 0.24 Orthogroups_2024-Update
Solyc09g020130 No alias 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA) 0.06 Orthogroups_2024-Update
Sopen06g034230 No alias Ribosomal L18p/L5e family 0.14 Orthogroups_2024-Update
Sopen09g013020 No alias Ribosomal L18p/L5e family 0.02 Orthogroups_2024-Update
evm.model.contig_3443.5 No alias (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 -... 0.27 Orthogroups_2024-Update
evm.model.tig00000194.49 No alias (o65353|rl5_helan : 322.0) 60S ribosomal protein L5 -... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
MF GO:0008097 5S rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR005485 Rbsml_L5_euk/L18_arc 14 175
IPR025607 Rbsml_L5e/L18P_C 235 288
No external refs found!