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  5. Brara.G00513.1

Brara.G00513.1


Description : plant-specific ALOG-type transcription factor


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00513.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
A4A49_35584 No alias protein light-dependent short hypocotyls 10 0.05 Orthogroups_2024-Update
At5g58500 No alias LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9] 0.03 Orthogroups_2024-Update
Brara.C03056.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00304.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00489.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.02G230200 No alias Protein of unknown function (DUF640) 0.01 Orthogroups_2024-Update
Glyma.05G123400 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
Glyma.08G078500 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Glyma.08G116100 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Glyma.19G248300 No alias Protein of unknown function (DUF640) 0.05 Orthogroups_2024-Update
Glyma.20G209200 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
Glyma.20G223100 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
LOC_Os05g28040 No alias DUF640 domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_12926g0010 No alias (at3g23290 : 222.0) LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4);... 0.03 Orthogroups_2024-Update
PSME_00056987-RA No alias (at3g23290 : 226.0) LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4);... 0.02 Orthogroups_2024-Update
Potri.011G066400 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Potri.011G109900 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Potri.011G156600 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Pp1s8_54V6 No alias T16B12.3; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.009G170100.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Solyc02g069510 No alias LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)... 0.05 Orthogroups_2024-Update
Solyc04g009980 No alias LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)... 0.03 Orthogroups_2024-Update
Sopen02g021720 No alias Protein of unknown function (DUF640) 0.02 Orthogroups_2024-Update
Sopen06g033590 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 43 161
No external refs found!