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  5. Brara.G00533.1

Brara.G00533.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00533.1
Cluster HCAA Clusters: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_18000 No alias putative pectate lyase 10 0.03 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.02 Orthogroups_2024-Update
At1g67750 No alias Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] 0.06 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
HORVU2Hr1G002880.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 182 361
No external refs found!