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  5. Brara.G00618.1

Brara.G00618.1


Description : regulatory protein *(MSH1) of genome stability maintenance


Gene families : OG_42_0004403 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004403_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00618.1
Cluster HCAA Clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Glyma.20G073500 No alias MUTL protein homolog 1 0.03 Orthogroups_2024-Update
Seita.7G160000.1 No alias regulatory protein *(MSH1) of genome stability maintenance 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006298 mismatch repair IEA 16Dec
MF GO:0030983 mismatched DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 134 219
IPR000432 DNA_mismatch_repair_MutS_C 771 951
No external refs found!