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  5. Brara.G00648.1

Brara.G00648.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00648.1
Cluster HCAA Clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
439243 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
A4A49_24630 No alias putative pectate lyase 3 0.02 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.02 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.02 Orthogroups_2024-Update
At1g30350 No alias Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] 0.03 Orthogroups_2024-Update
At3g54920 No alias Probable pectate lyase 13... 0.02 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G053800 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G002880.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
MA_10205415g0010 No alias (at5g63180 : 429.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_103716g0010 No alias (at1g67750 : 486.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
MA_10430145g0020 No alias (at5g48900 : 488.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_1164682g0010 No alias (at1g67750 : 389.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.012G091500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Solyc03g113150 No alias Pectate lyase (AHRD V3.3 *** K4BKG8_SOLLC) 0.02 Orthogroups_2024-Update
Solyc11g008140 No alias Pectate lyase (AHRD V3.3 *** K4D575_SOLLC) 0.04 Orthogroups_2024-Update
Sopen05g003050 No alias Pectate lyase 0.05 Orthogroups_2024-Update
Sopen09g034360 No alias Pectate lyase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 174 356
No external refs found!