Brara.G00852.1

Description : SBP-type transcription factor

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.G00852.1
Cluster	HCAA Clusters: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g26720	No alias	squamosa promoter binding protein-like 4	0.02	Orthogroups_2024-Update
GRMZM2G106798	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.03	Orthogroups_2024-Update
LOC_Os08g41940	No alias	OsSPL16 - SBP-box gene family member, expressed	0.03	Orthogroups_2024-Update
Pp1s337_52V6	No alias	squamosa promoter-binding	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0004312	fatty acid synthase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
MF	GO:0008198	ferrous iron binding	IEP	Predicted GO
MF	GO:0009922	fatty acid elongase activity	IEP	Predicted GO
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	157	230

External Links

No external refs found!