1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G00871.1

Brara.G00871.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000680 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000680_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00871.1
Cluster HCAA Clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
A4A49_35840 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Brara.C00028.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Mp6g12970.1 No alias RING-HC-class E3 ligase 0.02 Orthogroups_2024-Update
Potri.004G041200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G420900.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 147 187
No external refs found!