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  5. Brara.G00978.1

Brara.G00978.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00978.1
Cluster HCAA Clusters: Cluster_382

Target Alias Description ECC score Gene Family Method Actions
A4A49_14444 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
At5g17200 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At5g27530 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G364700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G079140.6 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00006809-RA No alias (at1g23460 : 407.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.001G171900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G159000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G119700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G383600.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.004G028700.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Solyc03g116580 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G80170.1) 0.03 Orthogroups_2024-Update
Solyc12g009420 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1) 0.03 Orthogroups_2024-Update
Sopen12g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 104 426
No external refs found!