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  5. Brara.G01016.1

Brara.G01016.1


Description : E3 ubiquitin ligase *(SINA)


Gene families : OG_42_0000590 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01016.1
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
At5g37900 No alias TRAF-like superfamily protein [Source:TAIR;Acc:AT5G37900] 0.03 Orthogroups_2024-Update
Bradi1g15623 No alias Protein with RING/U-box and TRAF-like domains 0.02 Orthogroups_2024-Update
MA_127844g0010 No alias (at5g37870 : 94.0) Protein with RING/U-box and TRAF-like... 0.04 Orthogroups_2024-Update
Potri.004G091900 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 74 147
No external refs found!