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  5. Brara.G01325.1

Brara.G01325.1


Description : component *(RPP2) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01325.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
139397 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
At2g27710 No alias AT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3] 0.08 Orthogroups_2024-Update
At2g27720 No alias 60S acidic ribosomal protein family... 0.03 Orthogroups_2024-Update
At3g44590 No alias Acidic ribosomal protein P2-like... 0.08 Orthogroups_2024-Update
Bradi2g23830 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Bradi5g09212 No alias 60S acidic ribosomal protein family 0.18 Orthogroups_2024-Update
Bradi5g09217 No alias 60S acidic ribosomal protein family 0.2 Orthogroups_2024-Update
Brara.C02416.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre02.g143050 No alias 60S acidic ribosomal protein family 0.25 Orthogroups_2024-Update
GRMZM2G075630 No alias 60S acidic ribosomal protein family 0.11 Orthogroups_2024-Update
GRMZM2G102891 No alias 60S acidic ribosomal protein family 0.14 Orthogroups_2024-Update
GRMZM2G105712 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
GRMZM2G119809 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
Glyma.03G193100 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
Glyma.10G067800 No alias 60S acidic ribosomal protein family 0.15 Orthogroups_2024-Update
Glyma.12G182800 No alias 60S acidic ribosomal protein family 0.16 Orthogroups_2024-Update
Glyma.13G318200 No alias 60S acidic ribosomal protein family 0.19 Orthogroups_2024-Update
Glyma.19G193200 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
Glyma.U031221 No alias 60S acidic ribosomal protein family 0.2 Orthogroups_2024-Update
HORVU1Hr1G073640.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
LOC_Os01g09510 No alias 60S acidic ribosomal protein, putative, expressed 0.07 Orthogroups_2024-Update
LOC_Os05g37330 No alias 60S acidic ribosomal protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_10431146g0010 No alias (o24415|rla2b_maize : 90.5) 60S acidic ribosomal protein... 0.06 Orthogroups_2024-Update
Mp1g06260.1 No alias component RPP2 of LSU proteome component 0.13 Orthogroups_2024-Update
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.04 Orthogroups_2024-Update
PSME_00022751-RA No alias (o24415|rla2b_maize : 100.0) 60S acidic ribosomal... 0.18 Orthogroups_2024-Update
PSME_00050387-RA No alias (original description: no original description) 0.17 Orthogroups_2024-Update
Potri.004G185800 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
Potri.009G146200 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
Pp1s14_289V6 No alias 60s acidic ribosomal protein 0.19 Orthogroups_2024-Update
Pp1s21_165V6 No alias 60s acidic ribosomal protein 0.23 Orthogroups_2024-Update
Pp1s30_261V6 No alias 60s acidic ribosomal protein 0.16 Orthogroups_2024-Update
Pp1s409_34V6 No alias 60s acidic ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s51_319V6 No alias 60s acidic ribosomal protein 0.21 Orthogroups_2024-Update
Seita.6G192700.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Seita.7G089200.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.006G067800.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Sobic.006G260400.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Sobic.009G242300.3 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Solyc06g074430 No alias 60s acidic ribosomal protein-like protein (AHRD V3.3 ***... 0.24 Orthogroups_2024-Update
Solyc11g067100 No alias 60s acidic ribosomal family protein (AHRD V3.3 *** A9PCM7_POPTR) 0.27 Orthogroups_2024-Update
Sopen01g004990 No alias 60s Acidic ribosomal protein 0.13 Orthogroups_2024-Update
Sopen06g030910 No alias 60s Acidic ribosomal protein 0.36 Orthogroups_2024-Update
Sopen11g026810 No alias 60s Acidic ribosomal protein 0.17 Orthogroups_2024-Update
evm.model.contig_2346.3 No alias no hits & (original description: no original description) 0.21 Orthogroups_2024-Update
evm.model.contig_3407.5 No alias no hits & (original description: no original description) 0.37 Orthogroups_2024-Update
evm.model.tig00020830.75 No alias no hits & (original description: no original description) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!