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  5. Brara.G01336.1

Brara.G01336.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01336.1
Cluster HCAA Clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
A4A49_21361 No alias ring-h2 finger protein atl78 0.03 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.03 Orthogroups_2024-Update
At2g17450 No alias Probable E3 ubiquitin-protein ligase ATL44... 0.04 Orthogroups_2024-Update
At3g19140 No alias Putative RING-H2 finger protein ATL62... 0.03 Orthogroups_2024-Update
At4g17245 No alias AT4g17240/dl4655c [Source:UniProtKB/TrEMBL;Acc:Q940N3] 0.03 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.03 Orthogroups_2024-Update
At5g27420 No alias E3 ubiquitin-protein ligase ATL31... 0.03 Orthogroups_2024-Update
Bradi1g46750 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g60390 No alias hypoxia-responsive family protein / zinc finger... 0.05 Orthogroups_2024-Update
Bradi2g22650 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g37430 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B00209.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02021.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.B02267.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01805.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00282.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E01886.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.F00385.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H00897.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I00473.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G004480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G478553 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G098100 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.04G222300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G175400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G140700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G025700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G239400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.03 Orthogroups_2024-Update
HORVU4Hr1G025400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU5Hr1G082840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G087960.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G096480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G121280.7 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os02g08200 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g14990 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g37740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g48310 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g11860 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g34870 No alias Zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g47700 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10426834g0010 No alias (at1g49230 : 115.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_10431388g0020 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_43543g0010 No alias (at3g16720 : 107.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_77628g0010 No alias (at1g72310 : 116.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 Orthogroups_2024-Update
PSME_00003016-RA No alias (at1g72200 : 114.0) RING/U-box superfamily protein;... 0.06 Orthogroups_2024-Update
PSME_00003023-RA No alias (at1g72200 : 141.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00054098-RA No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.04 Orthogroups_2024-Update
PSME_00057213-RA No alias (at1g72310 : 115.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G144200 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Potri.010G243200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s185_21V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.05 Orthogroups_2024-Update
Pp1s20_280V6 No alias ring finger 0.02 Orthogroups_2024-Update
Seita.1G017900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G197600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.2G238400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.4G172100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.9G410900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G232800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G339400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G181200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.004G301300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G030200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G205400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.010G157500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc01g105620 No alias RING/U-box superfamily protein, putative (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc02g067700 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc12g087860 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen11g005110 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_2025.32 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 134 177
No external refs found!