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  5. Brara.G01626.1

Brara.G01626.1


Description : component *(bL17c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0005563 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01626.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_36556 No alias 50s ribosomal protein l17, chloroplastic 0.07 Orthogroups_2024-Update
At3g54210 No alias 50S ribosomal protein L17, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi1g04130 No alias Ribosomal protein L17 family protein 0.09 Orthogroups_2024-Update
Cre02.g108850 No alias Ribosomal protein L17 family protein 0.13 Orthogroups_2024-Update
GRMZM2G108643 No alias Ribosomal protein L17 family protein 0.1 Orthogroups_2024-Update
Glyma.11G201700 No alias Ribosomal protein L17 family protein 0.06 Orthogroups_2024-Update
HORVU5Hr1G111640.1 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Kfl00372_0120 kfl00372_0120_v1.1 (at3g54210 : 186.0) Ribosomal protein L17 family... 0.08 Orthogroups_2024-Update
Potri.016G143100 No alias Ribosomal protein L17 family protein 0.07 Orthogroups_2024-Update
Pp1s37_63V6 No alias ribosomal protein l17-like protein 0.03 Orthogroups_2024-Update
Pp1s74_265V6 No alias ribosomal protein l17-like protein 0.09 Orthogroups_2024-Update
Seita.9G039000.1 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Sobic.001G040000.2 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Solyc06g082750 No alias 50S ribosomal protein L17 (AHRD V3.3 *** A0A072UXJ8_MEDTR) 0.03 Orthogroups_2024-Update
Sopen06g034110 No alias Ribosomal protein L17 0.1 Orthogroups_2024-Update
evm.model.tig00000889.52 No alias (at3g54210 : 159.0) Ribosomal protein L17 family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 112 208
No external refs found!