Brara.G01735.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01735.1
Cluster HCAA Clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
437868 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
A4A49_39464 No alias agamous-like mads-box protein agl8 0.03 Orthogroups_2024-Update
At4g22950 No alias Agamous-like MADS-box protein AGL19... 0.03 Orthogroups_2024-Update
Bradi1g39927 No alias AGAMOUS-like 23 0.02 Orthogroups_2024-Update
Bradi5g21700 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.I02103.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.I03027.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.05 Orthogroups_2024-Update
Brara.K00360.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM5G878490 No alias AGAMOUS-like 62 0.04 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.17G081200 No alias AGAMOUS-like 8 0.06 Orthogroups_2024-Update
LOC_Os02g07430 No alias OsMADS29 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g23910 No alias OsMADS25 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g01890 No alias MADS-box transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_333471g0010 No alias (at2g45660 : 106.0) Controls flowering and is required... 0.05 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.03 Orthogroups_2024-Update
Seita.2G002300.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Seita.3G280400.1 No alias MADS/AGL-type transcription factor 0.06 Orthogroups_2024-Update
Sobic.001G314400.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g093960 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR) 0.03 Orthogroups_2024-Update
Sopen01g045900 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update
Sopen12g029050 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 99 179
IPR002100 TF_MADSbox 10 57
No external refs found!