1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G01770.1

Brara.G01770.1


Description : autophagosome ubiquitin-fold protein *(ATG8)


Gene families : OG_42_0000932 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000932_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G01770.1
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Brara.B02658.1 No alias autophagosome ubiquitin-fold protein *(ATG8) 0.04 Orthogroups_2024-Update
Brara.C02286.1 No alias autophagosome ubiquitin-fold protein *(ATG8) 0.02 Orthogroups_2024-Update
Brara.C04506.1 No alias autophagosome ubiquitin-fold protein *(ATG8) 0.02 Orthogroups_2024-Update
Brara.C04589.1 No alias autophagosome ubiquitin-fold protein *(ATG8) 0.02 Orthogroups_2024-Update
Potri.004G013700 No alias Ubiquitin-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.002G315900.1 No alias autophagosome ubiquitin-fold protein *(ATG8) 0.03 Orthogroups_2024-Update
Solyc03g031650 No alias Autophagy-related protein (AHRD V3.3 *** K4Q337_PETHY) 0.03 Orthogroups_2024-Update
Solyc08g007400 No alias Autophagy-related protein (AHRD V3.3 *-* K4CIM7_SOLLC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR004241 Atg8-like 15 118
No external refs found!