Brara.G01817.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.G01817.1
Cluster	HCAA Clusters: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
A4A49_63038	No alias	agamous-like mads-box protein agl19	0.02	Orthogroups_2024-Update
At2g45660	No alias	SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]	0.03	Orthogroups_2024-Update
At4g09960	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
At5g60910	No alias	Agamous-like MADS-box protein AGL8...	0.03	Orthogroups_2024-Update
Bradi1g08340	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi2g57000	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Brara.K01743.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU3Hr1G026650.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
LOC_Os02g36924	No alias	OsMADS27 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g39130	No alias	OsMADS56 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
Potri.007G115000	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Pp1s26_90V6	No alias	agamous-like protein	0.03	Orthogroups_2024-Update
Seita.5G432700.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G142500.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Predicted GO
BP	GO:0032200	telomere organization	IEP	Predicted GO
BP	GO:0060249	anatomical structure homeostasis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	100	186
IPR002100	TF_MADSbox	25	72

External Links

No external refs found!

Brara.G01817.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation