Brara.G01891.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.G01891.1
Cluster	HCAA Clusters: Cluster_290

Target	Alias	Description	ECC score	Gene Family Method
405209	No alias	GATA transcription factor 20	0.03	Orthogroups_2024-Update
A4A49_01113	No alias	gata transcription factor 16	0.03	Orthogroups_2024-Update
A4A49_09786	No alias	gata transcription factor 2	0.04	Orthogroups_2024-Update
A4A49_17145	No alias	gata transcription factor 8	0.04	Orthogroups_2024-Update
A4A49_39670	No alias	gata transcription factor 11	0.03	Orthogroups_2024-Update
At2g45050	No alias	GATA transcription factor 2...	0.03	Orthogroups_2024-Update
Bradi2g62660	No alias	GATA transcription factor 17	0.02	Orthogroups_2024-Update
Bradi3g33200	No alias	GATA transcription factor 4	0.02	Orthogroups_2024-Update
Brara.C03804.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Cre01.g025050	No alias	GATA transcription factor 9	0.02	Orthogroups_2024-Update
GRMZM2G324131	No alias	GATA transcription factor 12	0.04	Orthogroups_2024-Update
GRMZM2G379005	No alias	GATA transcription factor 12	0.05	Orthogroups_2024-Update
Glyma.02G056600	No alias	GATA type zinc finger transcription factor family protein	0.04	Orthogroups_2024-Update
Glyma.02G071500	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Glyma.03G232900	No alias	GATA transcription factor 16	0.03	Orthogroups_2024-Update
Glyma.04G051300	No alias	cytokinin-responsive gata factor 1	0.03	Orthogroups_2024-Update
Glyma.04G084900	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Glyma.06G086400	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
Glyma.08G187300	No alias	GATA transcription factor 29	0.04	Orthogroups_2024-Update
Glyma.14G094800	No alias	cytokinin-responsive gata factor 1	0.02	Orthogroups_2024-Update
Glyma.17G192800	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
HORVU1Hr1G076000.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Potri.001G188500	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Potri.003G174800	No alias	GATA transcription factor 1	0.03	Orthogroups_2024-Update
Potri.013G059600	No alias	GATA transcription factor 12	0.03	Orthogroups_2024-Update
Pp1s241_14V6	No alias	hypothetical protein similar to Arabidopsis thaliana...	0.03	Orthogroups_2024-Update
Pp1s32_243V6	No alias	hypothetical protein similar to Arabidopsis thaliana...	0.03	Orthogroups_2024-Update
Seita.5G315100.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Sobic.008G179800.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Sobic.009G050600.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Sopen02g029260	No alias	GATA zinc finger	0.02	Orthogroups_2024-Update
Sopen09g034220	No alias	GATA zinc finger	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predicted GO
MF	GO:0004061	arylformamidase activity	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0004664	prephenate dehydratase activity	IEP	Predicted GO
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Predicted GO
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005985	sucrose metabolic process	IEP	Predicted GO
BP	GO:0005986	sucrose biosynthetic process	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predicted GO
BP	GO:0006568	tryptophan metabolic process	IEP	Predicted GO
BP	GO:0006569	tryptophan catabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predicted GO
BP	GO:0007265	Ras protein signal transduction	IEP	Predicted GO
BP	GO:0007266	Rho protein signal transduction	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predicted GO
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0009310	amine catabolic process	IEP	Predicted GO
BP	GO:0010215	cellulose microfibril organization	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0016053	organic acid biosynthetic process	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predicted GO
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
BP	GO:0030198	extracellular matrix organization	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
BP	GO:0042180	cellular ketone metabolic process	IEP	Predicted GO
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Predicted GO
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042436	indole-containing compound catabolic process	IEP	Predicted GO
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predicted GO
BP	GO:0043062	extracellular structure organization	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0046218	indolalkylamine catabolic process	IEP	Predicted GO
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Predicted GO
MF	GO:0050308	sugar-phosphatase activity	IEP	Predicted GO
BP	GO:0070189	kynurenine metabolic process	IEP	Predicted GO
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predicted GO
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predicted GO
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	165	198

External Links

No external refs found!

Brara.G01891.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation