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Description : component *(uL30) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.G02051.1 | |
| Cluster | HCAA Clusters: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 103994 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
| A4A49_59282 | No alias | 60s ribosomal protein l7-2 | 0.06 | Orthogroups_2024-Update | |
| Bradi1g04950 | No alias | Ribosomal protein L30/L7 family protein | 0.05 | Orthogroups_2024-Update | |
| Bradi5g20900 | No alias | Ribosomal protein L30/L7 family protein | 0.06 | Orthogroups_2024-Update | |
| Brara.C02245.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.D02679.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Brara.F03496.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.I02011.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Cre12.g537800 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G020000 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.08G222100 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G108990.2 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Mp3g13040.1 | No alias | component RPL7 of LSU proteome component | 0.04 | Orthogroups_2024-Update | |
| Potri.018G140300 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
| Pp1s243_40V6 | No alias | 60s ribosomal protein l7-2 | 0.03 | Orthogroups_2024-Update | |
| Pp1s7_369V6 | No alias | 60s ribosomal protein l7-2 | 0.04 | Orthogroups_2024-Update | |
| Seita.1G117100.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Seita.6G017200.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Seita.7G228400.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Sobic.007G085001.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Sobic.007G184400.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Solyc06g068400 | No alias | 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) | 0.03 | Orthogroups_2024-Update | |
| Solyc08g075090 | No alias | bHLH transcription factor144 | 0.04 | Orthogroups_2024-Update | |
| Sopen07g004260 | No alias | Ribosomal L30 N-terminal domain | 0.04 | Orthogroups_2024-Update | |
| Sopen08g023720 | No alias | Ribosomal L30 N-terminal domain | 0.07 | Orthogroups_2024-Update | |
| Sopen12g032080 | No alias | Ribosomal L30 N-terminal domain | 0.04 | Orthogroups_2024-Update | |
| evm.model.contig_2085.3 | No alias | (at3g13580 : 237.0) Ribosomal protein L30/L7 family... | 0.04 | Orthogroups_2024-Update | |
| evm.model.tig00020909.42 | No alias | (at2g44120 : 205.0) Ribosomal protein L30/L7 family... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
| MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR016082 | Ribosomal_L30_ferredoxin-like | 105 | 155 |
| No external refs found! |