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  5. Brara.G02258.1

Brara.G02258.1


Description : Unknown function


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02258.1
Cluster HCAA Clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
109767 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
109968 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
109995 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
114245 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
227274 No alias Function unknown 0.03 Orthogroups_2024-Update
229747 No alias germin-like protein 5 0.02 Orthogroups_2024-Update
270502 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
271728 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
419049 No alias germin-like protein 7 0.02 Orthogroups_2024-Update
446428 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
92738 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
At3g04170 No alias Germin-like protein subfamily 1 member 3... 0.02 Orthogroups_2024-Update
Bradi3g15190 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g15210 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G149714 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g50900 No alias Cupin domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g52720 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_3366g0010 No alias (at1g09560 : 259.0) germin-like protein (GLP5);... 0.02 Orthogroups_2024-Update
MA_926447g0010 No alias (at5g20630 : 238.0) Encodes a germin-like protein. Its... 0.03 Orthogroups_2024-Update
Mp5g13870.1 No alias Germin-like protein 5-1 OS=Oryza sativa subsp. japonica... 0.04 Orthogroups_2024-Update
Potri.011G162600 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G163800 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G180600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G050100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G136200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g113580 No alias Germin-like protein (AHRD V3.3 *** Q8H2A6_ANACO) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004788 thiamine diphosphokinase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030975 thiamine binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042357 thiamine diphosphate metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 64 210
No external refs found!