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  5. Brara.G02303.1

Brara.G02303.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02303.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
89607 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
A4A49_23702 No alias putative e3 ubiquitin-protein ligase hip1 0.06 Orthogroups_2024-Update
At5g24870 No alias At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775] 0.05 Orthogroups_2024-Update
Bradi5g20760 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C00432.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 Orthogroups_2024-Update
Glyma.02G103300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G241900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G214600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G180300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G138700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g06590 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.001G304900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G274700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.018G005600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.6G090500.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.7G226600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Seita.7G262700.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.006G205100.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc03g118840 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1) 0.06 Orthogroups_2024-Update
Solyc08g006460 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.03 Orthogroups_2024-Update
Solyc09g007530 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G37150.15) 0.03 Orthogroups_2024-Update
Solyc12g096420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.05 Orthogroups_2024-Update
Sopen03g037790 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen08g002410 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen12g032260 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004564 beta-fructofuranosidase activity IEP Predicted GO
MF GO:0004594 pantothenate kinase activity IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0015937 coenzyme A biosynthetic process IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 302 344
No external refs found!