1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G02319.1

Brara.G02319.1


Description : HD-ZIP IV-type transcription factor


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02319.1
Cluster HCAA Clusters: Cluster_374

Target Alias Description ECC score Gene Family Method Actions
A4A49_02283 No alias homeobox-leucine zipper protein meristem l1 0.03 Orthogroups_2024-Update
AC235534.1_FG007 No alias homeodomain GLABROUS 1 0.03 Orthogroups_2024-Update
At1g05230 No alias AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8] 0.04 Orthogroups_2024-Update
At2g32370 No alias Homeobox-leucine zipper protein HDG3... 0.03 Orthogroups_2024-Update
Bradi1g57082 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Orthogroups_2024-Update
Glyma.15G016500 No alias HD-ZIP IV family of homeobox-leucine zipper protein with... 0.03 Orthogroups_2024-Update
Potri.014G075200 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Orthogroups_2024-Update
Pp1s209_10V6 No alias No description available 0.04 Orthogroups_2024-Update
Seita.2G282200.1 No alias HD-ZIP IV-type transcription factor 0.03 Orthogroups_2024-Update
Solyc06g050160 No alias Homeobox leucine zipper protein (AHRD V3.3 *** A0A072TNH2_MEDTR) 0.05 Orthogroups_2024-Update
Sopen06g015560 No alias START domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008289 lipid binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 34 89
IPR002913 START_lipid-bd_dom 219 440
No external refs found!