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  5. Brara.G02490.1

Brara.G02490.1


Description : E3 ubiquitin ligase *(AIRP1)


Gene families : OG_42_0000832 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000832_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02490.1
Cluster HCAA Clusters: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
Brara.C04683.1 No alias E3 ubiquitin ligase *(AIRP1) 0.02 Orthogroups_2024-Update
Glyma.01G221000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G052000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G034700 No alias RING-H2 finger B1A 0.03 Orthogroups_2024-Update
LOC_Os01g70160 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.05 Orthogroups_2024-Update
Pp1s455_5V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0000492 box C/D snoRNP assembly IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 18 64
No external refs found!