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  5. Brara.G02602.1

Brara.G02602.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000668_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02602.1
Cluster HCAA Clusters: Cluster_396

Target Alias Description ECC score Gene Family Method Actions
A4A49_03327 No alias polygalacturonase 0.04 Orthogroups_2024-Update
At1g65570 No alias F5I14.10 [Source:UniProtKB/TrEMBL;Acc:O04474] 0.02 Orthogroups_2024-Update
At3g59850 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Glyma.07G223500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G196100 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.007G144100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 61 384
No external refs found!