1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G02642.1

Brara.G02642.1


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG_42_0001005 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001005_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02642.1
Cluster HCAA Clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g17010 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g14470 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g01010 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00044018-RA No alias (at5g59950 : 169.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
Potri.017G129900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Solyc04g014460 No alias RNA-binding family protein (AHRD V3.3 *-* A0A061H038_THECC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0042575 DNA polymerase complex IEP Predicted GO
CC GO:0043625 delta DNA polymerase complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0051382 kinetochore assembly IEP Predicted GO
BP GO:0051383 kinetochore organization IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 93 161
IPR025715 FoP_C 220 272
No external refs found!