1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G02733.1

Brara.G02733.1


Description : component *(PsbY) of PS-II complex


Gene families : OG_42_0005644 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005644_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02733.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
A4A49_36701 No alias photosystem ii core complex proteins psby, chloroplastic 0.1 Orthogroups_2024-Update
At1g67740 No alias Putative uncharacterized protein... 0.05 Orthogroups_2024-Update
Bradi3g13970 No alias photosystem II BY 0.04 Orthogroups_2024-Update
Cre10.g452100 No alias photosystem II BY 0.1 Orthogroups_2024-Update
Glyma.05G172300 No alias photosystem II BY 0.09 Orthogroups_2024-Update
Glyma.11G245400 No alias photosystem II BY 0.08 Orthogroups_2024-Update
Kfl00370_0100 kfl00370_0100_v1.1 no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
MA_12201g0010 No alias (at1g67740 : 114.0) PsbY precursor (psbY) mRNA. This... 0.06 Orthogroups_2024-Update
Mp8g12730.1 No alias component PsbY of PS-II complex 0.04 Orthogroups_2024-Update
Pp1s101_95V6 No alias photosystem ii protein 0.06 Orthogroups_2024-Update
Pp1s221_76V6 No alias photosystem ii protein 0.08 Orthogroups_2024-Update
Seita.6G082000.1 No alias component *(PsbY) of PS-II complex 0.05 Orthogroups_2024-Update
Sobic.007G023300.1 No alias component *(PsbY) of PS-II complex 0.08 Orthogroups_2024-Update
Solyc10g077120 No alias Photosystem II core complex proteins psbY (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen10g028800 No alias Photosystem II protein Y (PsbY) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
MF GO:0030145 manganese ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009388 PSII_PsbY 219 251
IPR009388 PSII_PsbY 146 178
No external refs found!