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  5. Brara.G02874.1

Brara.G02874.1


Description : calcium-permeable channel *(OSCA)


Gene families : OG_42_0000192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02874.1
Cluster HCAA Clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
At1g69450 No alias Early-responsive to dehydration stress protein (ERD4)... 0.04 Orthogroups_2024-Update
At4g04340 No alias Protein OSCA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEA1] 0.04 Orthogroups_2024-Update
Brara.F00887.1 No alias calcium-permeable channel *(OSCA) 0.04 Orthogroups_2024-Update
Brara.H01892.1 No alias calcium-permeable channel *(OSCA) 0.05 Orthogroups_2024-Update
GRMZM2G163059 No alias lipases;hydrolases, acting on ester bonds 0.03 Orthogroups_2024-Update
GRMZM2G164470 No alias lipases;hydrolases, acting on ester bonds 0.03 Orthogroups_2024-Update
Glyma.20G066800 No alias ERD (early-responsive to dehydration stress) family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G004230.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
HORVU1Hr1G051200.12 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
HORVU5Hr1G001670.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
MA_99251g0010 No alias (at1g30360 : 376.0) early-responsive to dehydration 4... 0.03 Orthogroups_2024-Update
PSME_00002534-RA No alias (at1g30360 : 781.0) early-responsive to dehydration 4... 0.02 Orthogroups_2024-Update
Pp1s127_53V6 No alias early-responsive to dehydration erd 0.02 Orthogroups_2024-Update
Pp1s213_49V6 No alias early responsive to dehydration protein 0.03 Orthogroups_2024-Update
Seita.3G120200.1 No alias calcium-permeable channel *(OSCA) 0.04 Orthogroups_2024-Update
Seita.3G253400.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Seita.3G403000.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Sobic.008G187100.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Solyc02g036260 No alias ERD (early-responsive to dehydration stress) family... 0.03 Orthogroups_2024-Update
Sopen08g008540 No alias Domain of unknown function DUF221 0.03 Orthogroups_2024-Update
Sopen12g030230 No alias Domain of unknown function DUF221 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR003864 RSN1_7TM 355 619
IPR027815 PHM7_cyt 188 342
IPR032880 Csc1_N 6 165
No external refs found!