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  5. Brara.G02892.1

Brara.G02892.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02892.1
Cluster HCAA Clusters: Cluster_344

Target Alias Description ECC score Gene Family Method Actions
Bradi2g21880 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.E02831.1 No alias GARP subgroup PHL transcription factor 0.04 Orthogroups_2024-Update
Brara.E03448.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Glyma.11G183400 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os08g33750 No alias myb-like DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g01480 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10251997g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp3g04970.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
Potri.010G185666 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G001200 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G117000 No alias myb-like HTH transcriptional regulator family protein 0.04 Orthogroups_2024-Update
Pp1s37_226V6 No alias F18A5.30; myb family transcription factor [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Seita.1G021500.1 No alias transcription factor *(CLAUSA) 0.03 Orthogroups_2024-Update
Sobic.006G202300.2 No alias GARP subgroup PHL transcription factor 0.04 Orthogroups_2024-Update
Solyc09g005370 No alias MYB transcription factor (AHRD V3.3 *-* K9JGB9_SOYBN) 0.03 Orthogroups_2024-Update
Sopen04g033180 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen11g026970 No alias MYB-CC type transfactor, LHEQLE motif 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 30 81
IPR025756 Myb_CC_LHEQLE 129 175
No external refs found!