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  5. Brara.G02907.1

Brara.G02907.1


Description : component *(uL16) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02907.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
437527 No alias Ribosomal protein L16p/L10e family protein 0.1 Orthogroups_2024-Update
A4A49_56503 No alias 60s ribosomal protein l10 0.13 Orthogroups_2024-Update
A4A49_60639 No alias 60s ribosomal protein l10 0.14 Orthogroups_2024-Update
At1g14320 No alias 60S ribosomal protein L10-1... 0.04 Orthogroups_2024-Update
At1g66580 No alias 60S ribosomal protein L10-3... 0.09 Orthogroups_2024-Update
Bradi2g34440 No alias Ribosomal protein L16p/L10e family protein 0.08 Orthogroups_2024-Update
Brara.G02465.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Cre09.g388200 No alias senescence associated gene 24 0.14 Orthogroups_2024-Update
Glyma.02G220000 No alias Ribosomal protein L16p/L10e family protein 0.2 Orthogroups_2024-Update
Glyma.06G140900 No alias Ribosomal protein L16p/L10e family protein 0.1 Orthogroups_2024-Update
Glyma.14G187800 No alias Ribosomal protein L16p/L10e family protein 0.22 Orthogroups_2024-Update
HORVU1Hr1G024710.2 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Kfl00865_0050 kfl00865_0050_v1.1 (p93847|rl10_solme : 387.0) 60S ribosomal protein L10... 0.02 Orthogroups_2024-Update
MA_17326g0010 No alias (p93847|rl10_solme : 399.0) 60S ribosomal protein L10... 0.04 Orthogroups_2024-Update
Mp4g23990.1 No alias component RPL10 of LSU proteome component 0.08 Orthogroups_2024-Update
PSME_00015731-RA No alias (p93847|rl10_solme : 394.0) 60S ribosomal protein L10... 0.09 Orthogroups_2024-Update
PSME_00042423-RA No alias (p93847|rl10_solme : 402.0) 60S ribosomal protein L10... 0.04 Orthogroups_2024-Update
Potri.013G159600 No alias Ribosomal protein L16p/L10e family protein 0.04 Orthogroups_2024-Update
Pp1s22_94V6 No alias 60s ribosomal protein l10-3 0.31 Orthogroups_2024-Update
Pp1s2_197V6 No alias 60s ribosomal protein l10-3 0.05 Orthogroups_2024-Update
Pp1s347_24V6 No alias 60s ribosomal protein l10-3 0.2 Orthogroups_2024-Update
Pp1s447_11V6 No alias 60s ribosomal protein l10-3 0.03 Orthogroups_2024-Update
Seita.1G023800.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Seita.3G099700.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G273300.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Sobic.001G177800.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Sobic.004G103700.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Solyc06g007520 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.3 Orthogroups_2024-Update
Solyc06g082650 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.26 Orthogroups_2024-Update
Solyc06g082670 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.34 Orthogroups_2024-Update
Sopen06g002430 No alias Ribosomal protein L16p/L10e 0.31 Orthogroups_2024-Update
Sopen06g034040 No alias Ribosomal protein L16p/L10e 0.19 Orthogroups_2024-Update
Sopen06g034060 No alias Ribosomal protein L16p/L10e 0.28 Orthogroups_2024-Update
evm.model.tig00001424.5 No alias (p45636|rl102_orysa : 214.0) 60S ribosomal protein L10-2... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 13 166
No external refs found!