1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G02979.1

Brara.G02979.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02979.1
Cluster HCAA Clusters: Cluster_362

Target Alias Description ECC score Gene Family Method Actions
At2g44210 No alias AT2G44210 protein [Source:UniProtKB/TrEMBL;Acc:B9DGK6] 0.03 Orthogroups_2024-Update
Brara.E00409.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.08G161600 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Glyma.17G087100 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
LOC_Os01g07570 No alias carboxyl-terminal proteinase, putative, expressed 0.02 Orthogroups_2024-Update
MA_7933g0010 No alias (at1g55360 : 580.0) Protein of Unknown Function... 0.03 Orthogroups_2024-Update
Potri.006G233700 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Potri.013G050900 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Pp1s293_13V6 No alias MRP15.17; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005747 mitochondrial respiratory chain complex I IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006808 regulation of nitrogen utilization IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
CC GO:0030964 NADH dehydrogenase complex IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predicted GO
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
CC GO:0045271 respiratory chain complex I IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004314 Neprosin 250 461
IPR025521 Neprosin_propep 120 226
No external refs found!