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  5. Brara.G02989.1

Brara.G02989.1


Description : RNA editing factor *(OZ)


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G02989.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
426987 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
At1g70650 No alias Ran BP2/NZF zinc finger-like superfamily protein... 0.06 Orthogroups_2024-Update
Bradi1g11210 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G080139 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
GRMZM2G177885 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
MA_10426200g0010 No alias (at1g55040 : 288.0) zinc finger (Ran-binding) family... 0.03 Orthogroups_2024-Update
Potri.010G107400 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G046500 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
Seita.9G118800.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Seita.9G121200.1 No alias RNA editing factor *(OZ) 0.05 Orthogroups_2024-Update
Sobic.001G116800.1 No alias RNA editing factor *(OZ) 0.02 Orthogroups_2024-Update
Sobic.001G119600.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Sobic.002G112600.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Solyc01g099230 No alias Zinc finger family protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc03g118680 No alias Zinc finger protein (AHRD V3.3 *** W9RJ16_9ROSA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 287 311
IPR001876 Znf_RanBP2 322 344
IPR001876 Znf_RanBP2 242 266
No external refs found!