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  5. Brara.G03129.1

Brara.G03129.1


Description : component *(NOC1) of ribosomal-subunit proteome nuclear export complex


Gene families : OG_42_0005575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03129.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
405981 No alias CCAAT-binding factor 0.05 Orthogroups_2024-Update
At1g72440 No alias CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IDC2] 0.14 Orthogroups_2024-Update
Bradi3g47770 No alias CCAAT-binding factor 0.15 Orthogroups_2024-Update
Cre10.g459600 No alias CCAAT-binding factor 0.06 Orthogroups_2024-Update
Glyma.07G043700 No alias CCAAT-binding factor 0.09 Orthogroups_2024-Update
Glyma.16G012100 No alias CCAAT-binding factor 0.08 Orthogroups_2024-Update
Kfl00105_0290 kfl00105_0290_v1.1 (at1g72440 : 437.0) Encodes SLOW WALKER2 (SWA2), a... 0.09 Orthogroups_2024-Update
Mp1g16990.1 No alias component NOC1 of ribosomal subunit nuclear export complex 0.02 Orthogroups_2024-Update
Potri.001G164100 No alias CCAAT-binding factor 0.03 Orthogroups_2024-Update
Pp1s8_147V6 No alias ccaat enhancer binding protein zeta 0.06 Orthogroups_2024-Update
Seita.2G178000.1 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.04 Orthogroups_2024-Update
Sobic.001G453400.2 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.07 Orthogroups_2024-Update
Solyc03g123530 No alias CCAAT/enhancer-binding zeta (AHRD V3.3 *** A0A0B0MUY0_GOSAR) 0.16 Orthogroups_2024-Update
Sopen03g041300 No alias CBF/Mak21 family 0.07 Orthogroups_2024-Update
evm.model.tig00021293.22 No alias no hits & (original description: no original description) 0.12 Orthogroups_2024-Update
evm.model.tig00021293.23 No alias (at1g72440 : 137.0) Encodes SLOW WALKER2 (SWA2), a... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 501 747
No external refs found!