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At2g25210


Description : Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210]


Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g25210
Cluster HCCA clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g55370 No alias 60S ribosomal protein L39, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08320 No alias 60S ribosomal protein L39, putative, expressed 0.03 Orthogroups_2024-Update
Potri.018G022100 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
Pp1s104_75V6 No alias 60s ribosomal protein l39 0.03 Orthogroups_2024-Update
Pp1s89_150V6 No alias 60S ribosomal protein L39... 0.05 Orthogroups_2024-Update
Seita.1G351900.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc12g010350 No alias 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 2 42
No external refs found!