1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G03217.1

Brara.G03217.1


Description : E3 ubiquitin ligase *(PPRT)


Gene families : OG_42_0002296 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002296_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03217.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
At1g18470 No alias At1g18470 [Source:UniProtKB/TrEMBL;Acc:Q8LBF1] 0.03 Orthogroups_2024-Update
At1g68820 No alias Transmembrane Fragile-X-F-associated protein... 0.03 Orthogroups_2024-Update
Bradi1g11070 No alias Transmembrane Fragile-X-F-associated protein 0.04 Orthogroups_2024-Update
Sobic.002G198300.2 No alias E3 ubiquitin ligase *(PPRT) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR019396 TM_Fragile-X-F-assoc 28 278
No external refs found!