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  5. Brara.G03268.1

Brara.G03268.1


Description : HD-ZIP IV-type transcription factor


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03268.1
Cluster HCAA Clusters: Cluster_375

Target Alias Description ECC score Gene Family Method Actions
Glyma.12G212802 No alias protodermal factor 2 0.02 Orthogroups_2024-Update
Glyma.13G308200 No alias homeodomain GLABROUS 2 0.03 Orthogroups_2024-Update
Potri.012G139300 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Orthogroups_2024-Update
Seita.1G335800.1 No alias HD-ZIP IV-type transcription factor 0.04 Orthogroups_2024-Update
Solyc03g031760 No alias Homeobox-leucine zipper family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc08g062520 No alias No description available 0.03 Orthogroups_2024-Update
Sopen10g001320 No alias START domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008289 lipid binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
BP GO:0045048 protein insertion into ER membrane IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 225 446
IPR001356 Homeobox_dom 35 90
No external refs found!