Brara.G03317.1

Description : component *(uS9c) of small plastid ribosomal-subunit proteome

Gene families : OG_42_0006934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006934_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.G03317.1
Cluster	HCAA Clusters: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
A4A49_40026	No alias	30s ribosomal protein s9, chloroplastic	0.03	Orthogroups_2024-Update
AC234157.1_FG002	No alias	ribosomal protein S9	0.08	Orthogroups_2024-Update
At1g74970	No alias	30S ribosomal protein S9, chloroplastic...	0.03	Orthogroups_2024-Update
Bradi1g07370	No alias	ribosomal protein S9	0.05	Orthogroups_2024-Update
Glyma.17G247300	No alias	ribosomal protein S9	0.08	Orthogroups_2024-Update
HORVU5Hr1G098340.3	No alias	Unknown function	0.08	Orthogroups_2024-Update
PSME_00020353-RA	No alias	(at1g74970 : 152.0) ribosomal protein S9, nuclear...	0.05	Orthogroups_2024-Update
Potri.002G132200	No alias	ribosomal protein S9	0.1	Orthogroups_2024-Update
Potri.014G039600	No alias	ribosomal protein S9	0.07	Orthogroups_2024-Update
Pp1s128_49V6	No alias	30s ribosomal protein s9	0.05	Orthogroups_2024-Update
Pp1s199_88V6	No alias	30s ribosomal protein s9	0.03	Orthogroups_2024-Update
Seita.9G076300.1	No alias	component *(uS9c) of small plastid ribosomal-subunit proteome	0.07	Orthogroups_2024-Update
Sobic.001G076500.1	No alias	component *(uS9c) of small plastid ribosomal-subunit proteome	0.1	Orthogroups_2024-Update
Solyc04g079790	No alias	30S ribosomal protein S9 (AHRD V3.3 *** A9PB01_POPTR)	0.09	Orthogroups_2024-Update
Sopen04g033370	No alias	Ribosomal protein S9/S16	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0004784	superoxide dismutase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	90	211

External Links

No external refs found!

Brara.G03317.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation