Brara.G03398.1


Description : RNA pseudouridine synthase *(PUS2)


Gene families : OG_42_0005565 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005565_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03398.1
Cluster HCAA Clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Sobic.010G268100.1 No alias RNA pseudouridine synthase *(PUS2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0009451 RNA modification IEA 16Dec
MF GO:0009982 pseudouridine synthase activity IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 74 120
IPR006145 PsdUridine_synth_RsuA/RluD 147 327
No external refs found!