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  5. Brara.G03406.1

Brara.G03406.1


Description : DNA bending architectural protein *(HMG-B)


Gene families : OG_42_0001716 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03406.1
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
At1g76110 No alias High mobility group B protein 9... 0.04 Orthogroups_2024-Update
Cre12.g508050 No alias auxin response factor 17 0.02 Orthogroups_2024-Update
evm.model.tig00000851.35 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 256 323
IPR001606 ARID_dom 43 125
No external refs found!