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  5. Brara.G03409.1

Brara.G03409.1


Description : alpha amylase


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03409.1
Cluster HCAA Clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
At1g76130 No alias Probable alpha-amylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFG1] 0.03 Orthogroups_2024-Update
Glyma.14G222600 No alias alpha-amylase-like 2 0.04 Orthogroups_2024-Update
PSME_00029786-RA No alias (at1g69830 : 387.0) Encodes a plastid-localized... 0.03 Orthogroups_2024-Update
Potri.002G126300 No alias alpha-amylase-like 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 52 333
IPR012850 A-amylase_bs_C 356 412
No external refs found!