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  5. At2g25370

At2g25370


Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4IRP0]


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g25370
Cluster HCCA clusters: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
A4A49_40485 No alias putative e3 ubiquitin-protein ligase ari8 0.03 Orthogroups_2024-Update
At2g25360 No alias RBR-type E3 ubiquitin transferase... 0.04 Orthogroups_2024-Update
At3g14250 No alias RBR-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Brara.C01049.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Brara.F01844.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.05 Orthogroups_2024-Update
GRMZM2G066171 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G074200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G121290.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os09g26460 No alias protein binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10123705g0010 No alias (at3g53690 : 176.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Potri.006G104700 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Potri.018G064300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.8G001900.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.03 Orthogroups_2024-Update
Solyc03g115920 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G14250.1) 0.05 Orthogroups_2024-Update
Solyc03g117860 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT3G14250.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 452 499
IPR002867 IBR_dom 372 435
IPR002156 RNaseH_domain 173 288
No external refs found!