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  5. Brara.G03488.1

Brara.G03488.1


Description : substrate adaptor *(SKP2) of SCF E3 ubiquitin ligase complex


Gene families : OG_42_0003739 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003739_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03488.1
Cluster HCAA Clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
411335 No alias Function unknown 0.02 Orthogroups_2024-Update
A4A49_30973 No alias f-box protein skp2a 0.04 Orthogroups_2024-Update
At1g21410 No alias F-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4] 0.03 Orthogroups_2024-Update
At1g77000 No alias F-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286] 0.03 Orthogroups_2024-Update
LOC_Os01g65920 No alias F-box/LRR-repeat protein 2, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00033167-RA No alias (at1g21410 : 387.0) AtSKP2;1 is a homolog of human SKP2,... 0.02 Orthogroups_2024-Update
Potri.002G074700 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 216 239
IPR001611 Leu-rich_rpt 137 154
IPR001611 Leu-rich_rpt 190 213
IPR001810 F-box_dom 23 57
No external refs found!