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  5. Brara.G03542.1

Brara.G03542.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03542.1

Target Alias Description ECC score Gene Family Method Actions
A4A49_19521 No alias developmental protein sepallata 1 0.02 Orthogroups_2024-Update
Brara.A01539.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.C02304.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
Brara.D01347.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.04 Orthogroups_2024-Update
Potri.017G099800 No alias AGAMOUS-like 8 0.02 Orthogroups_2024-Update
Seita.6G223400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 55
No external refs found!