1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G03700.1

Brara.G03700.1


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0001501 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03700.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
At1g15920 No alias Probable CCR4-associated factor 1 homolog 2... 0.05 Orthogroups_2024-Update
Cre03.g157300 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 Orthogroups_2024-Update
Glyma.04G062300 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.04 Orthogroups_2024-Update
LOC_Os08g34170 No alias CAF1 family ribonuclease containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Solyc11g045130 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 160 220
IPR006941 RNase_CAF1 15 138
No external refs found!