1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H00104.1

Brara.H00104.1


Description : stress granule assembly factor *(UBP1)


Gene families : OG_42_0001825 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001825_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00104.1
Cluster HCAA Clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
Mp1g10220.1 No alias mRNA-binding regulatory factor (UBP1) 0.02 Orthogroups_2024-Update
Sobic.007G203200.1 No alias stress granule assembly factor *(UBP1) 0.02 Orthogroups_2024-Update
evm.model.tig00000670.23 No alias (at1g17370 : 117.0) oligouridylate binding protein 1B... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004371 glycerone kinase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
BP GO:0016126 sterol biosynthetic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 147 217
IPR000504 RRM_dom 269 326
IPR000504 RRM_dom 62 128
No external refs found!