Brara.H00210.1

Description : component *(Y14) of RNA quality control Exon Junction complex

Gene families : OG_42_0003551 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003551_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.H00210.1
Cluster	HCAA Clusters: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
GRMZM5G803275	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Orthogroups_2024-Update
LOC_Os05g04850	No alias	RNA recognition motif containing protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp5g04230.1	No alias	component Y14 of RNA quality control Exon Junction complex	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004107	chorismate synthase activity	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
MF	GO:0051920	peroxiredoxin activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	95	163

External Links

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