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  5. Brara.H00354.1

Brara.H00354.1


Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00354.1
Cluster HCAA Clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Brara.D01607.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
GRMZM2G361518 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Kfl00001_0480 kfl00001_0480_v1.... (at1g48410 : 697.0) Encodes an RNA Slicer that... 0.02 Orthogroups_2024-Update
Potri.009G001500 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Seita.7G236800.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Solyc06g073530 No alias Argonaute4c 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR024357 Argonaut_Gly-rich 110 203
IPR032472 ArgoL2 558 604
IPR014811 ArgoL1 367 416
IPR003100 PAZ_dom 443 547
IPR003165 Piwi 708 1027
IPR032473 Argonaute_Mid_dom 615 690
IPR032474 Argonaute_N 221 356
No external refs found!